Research teams and research areas

The Institut de la Vision brings together nearly 300 researchers in 18 research units specialized in ophthalmological pathologies. At the forefront of scientific innovation, these units conduct translational research aimed at developing cutting-edge technological solutions and therapeutic innovations for the prevention, diagnosis and treatment of these pathologies. Organized around five strategic research axes, the teams of the Institut de la Vision cover a wide range of topics, from the molecular physiology of vision to innovative therapeutic approaches.

Wavefront Engineering Microscopy

The research of the Wavefront Engineering Microscopy group combines technological innovation with fundamental neuroscience questions. On the technological side, the group develops advanced optical methods for stimulating and monitoring neuronal activity (all-optical methos) that integrate single- and multiphoton excitation with spatiotemporal wavefront shaping, holographic illumination, compressed sensing, and probe engineering. On the neuroscientific side, these cutting-edge tools, combined with optogenetic actuators and functional imaging approaches, are used to investigate, with unprecedented precision, functional connectivity and signal processing in neuronal circuits underlying visual perception. In parallel, insights gained from studies of visual circuits and advanced methodological developments are used to guide larger translational research efforts aimed at understanding and ultimately restoring vision in humans.

Valentina Emiliani Research director, Team leader
View profile

Presentation

Combined with optogenetic actuators and high-power amplified lasers, these optical strategies enable precise spatiotemporal control of the activity of single or multiple targeted neurons. This allowed manipulation of neural circuits across millimeter-sized volumes, with cellular spatial resolution and millisecond-range temporal precision in the mouse cortex, both in vitro and in vivo. Coupled with calcium imaging, we demonstrated all-optical read/write interfaces for simultaneously monitoring and manipulating neuronal activity, enabling fine-scale functional mapping of neural circuits. By integrating multiphoton holography with endoscopy, the group has demonstrated simultaneous photostimulation and fast functional imaging (up to 80 Hz) at cellular resolution in freely moving mice, targeting both cortical areas and the hippocampus. More recently, the group has shown that holographic light shaping combined with temporal focusing enables high-contrast, high-resolution in vitro and in vivo voltage imaging in densely labeled preparations, including mouse cortex and zebrafish larvae expressing GFP- and rhodopsin-based genetically encoded voltage indicators.
These research efforts are organized around four main domains:

  1. Large-scale holographic optogenetics and voltage imaging
    We develop optical strategies for large-scale, two-photon multi-target photostimulation and functional (Ca²⁺ or voltage) imaging. These approaches enable precise, parallel illumination of large neuronal ensembles while maintaining high temporal and spatial resolution. Ultimately, this work aims to enable high-throughput, all-optical large-scale mapping of functional neuronal connectivity across extended and anatomically distributed brain regions in mice.
  2. In-depth all-optical circuit manipulation with three-photon holographic microscopy
    We develop advanced three-photon holographic approaches for precise, cell-resolved optical stimulation and functional imaging of neuronal populations deep in living tissue. These methods support new experimental paradigms to probe the organization and dynamics of neural circuits across cortical layers.
  3. All-optical manipulation of retinal circuits
    We develop all-optical read–write interfaces for the non-invasive interrogation of retinal circuits across multiple functional layers. These systems enable simultaneous control of retinal inputs to photoreceptors, manipulation of internal retinal processing circuits, and monitoring of neuronal responses at the level of retinal ganglion cells in mouse retina and non-human primate retinal explants.
  4. All-optical manipulation in freely moving animals
    We have developed a new class of flexible two-photon microendoscopes (2P-FENDO) that enable near-cellular–resolution imaging and optogenetic control of neuronal activity in cortical layer of freely moving mice providing fast imaging and large fields of view of up to ~500 µm. Recent 2P-FENDO architectures enable in-depth imaging and targeted photostimulation in deep brain regions such as the hippocampus. Together, these instruments provide unique capabilities to monitor and perturb neural circuits in freely behaving animals, opening new avenues for studying the neural basis of behavior in naturalistic relevant conditions.

Research areas

  • All-optical manipulation in freely moving animals
  • All-optical manipulation of retinal circuits
  • Holographic optogenetics and voltage imaging
  • In depth all-optical circuits manipulation with 3P holographic microscopy

Team members

Valentina Emiliani Research director, Team leader
View profile
Benoit Forget Professor
View profile
Quentin Gaucher Associate professor
View profile
Eirini Papagiakoumou Research scientist
View profile
Dimitrii Tanese Research scientist
View profile
Emiliano Ronzitti Research scientist
View profile
Vincent De Sars Research engineer
View profile
Christophe Tourain Assistant engineer
View profile
Valéria Zampini Research engineer
View profile
Maria Dominguez-Escribano Research engineer
View profile
Imane Bendifallah Research engineer
View profile
Elodie Gonzalez Assistant engineer
View profile
Mathias Imezgaren Research engineer
View profile
Laurence Tricot Lab technician
View profile
Rafael Castillo Negrete Postdoctoral researcher
View profile
Rémi Fournel Postdoctoral researcher
View profile
Amit Kumar Postdoctoral researcher
View profile
Ruth Sims Postdoctoral researcher
View profile
Gabriele Nardi Postdoctoral researcher
View profile
Jeremie Nataf PhD student
View profile
Tom Maslianitsyna PhD student
View profile
Ornella Riehm PhD student
View profile
Aysha Abdul Gaffoor PhD student
View profile
Marie-Louise Contreras PhD student
View profile
Polina Kostina PhD Student
View profile
Julien Nassif PhD student
View profile
Hassan Heidarisaani PhD student
View profile
Shuquan Xiao PhD student
View profile

Scientific publications

Below you will find the latest scientific publications in this field: Wavefront Engineering Microscopy.

CHLOK: a chemigenetic multicolor labeling system to visualize neuronal birthdate and circuit integration

Giulia Faini , Matthieu Tuffery , Amna Saleem , Lixia Zhang , Felix Du , Guillaume Le Bourdelles , Karine Duroure, Eric Schreiter , Dimitrii Tanese , Valentina Emiliani , Minoru Koyama, and Filippo del Bene
Nature Neuroscience

2P-FENDO-II: a fiber bundle microscope for all optical brain study on large field of view in freely moving mice

F. G. C. Blot, D. Decombe , A. Lorca-Cámara, M. Anquetil, V. de Sars, C. Tourain, N. Accanto, V. Emiliani
2026 | Cell report methods |

Two-photon voltage imaging with rhodopsin-based sensors

Christiane Grimm, Ruth R. Sims, Dimitrii Tanese, Aysha S. Mohamed Lafirdeen, Imane Bendifallah, Chung Yuen Chan, Giulia Faini, Elena Putti, Filippo Del Bene, Eirini Papagiakoumou, Valentina Emiliani,
2026 | Neuron | https://doi.org/10.1016/j.neuron.2025.12.014

Roadmap for direct and indirect translation of optogenetics into discoveries and therapies for humans

Christian Lüscher, Valentina Emiliani, Nita Farahany, Aryn Gittis, Viviana Gradinaru, Katherine A. High, Botond Roska, José-Alain Sahel, Ofer Yizhar, Hongkui Zeng, and Karl Deisseroth
2025 | Nature Neuroscience | https://doi.org/10.1038/s41593-025-02097-9

High-throughput synaptic connectivity mapping using in vivo two-photon holographic optogenetics and compressive sensing

I-Wen Chen, Chung Yuen Chan, Phillip Navarro, Vincent de Sars, Emiliano Ronzitti, Karim Oweiss, Dimitrii Tanese and Valentina Emiliani
2025 | Nature Neuroscience | https://doi.org/10.1038/s41593-025-02024-y

Functional networks of inhibitory neurons orchestrate synchrony in the hippocampus

Marco Bocchio, Artem Vorobyev, Sadra Sadeh, Sophie Brustlein, Robin Dard, Susanne Reichinnek, Valentina Emiliani, Agnes Baude, Claudia Clopath and Rosa Cossart
2024 | PLOS Biology | https://doi.org/10.1371/journal.pbio.3002837

Scanless two-photon voltage imaging

Ruth R. Sims, Imane Bendifallah, Christiane Grimm, Aysha S. Mohamed Lafirdeen, Soledad Domínguez, Chung Yuen Chan, Xiaoyu Lu, Benoît C. Forget, François St-Pierre, Eirini Papagiakoumou and Valentina Emiliani
2024 | Nature Communications | https://doi.org/10.1038/s41467-024-49192-2

Blue-shifted genetically encoded Ca2+ indicator with enhanced two-photon absorption

Abhi Aggarwal, Smrithi Sunil, Imane Bendifallah, Michael Moon, Mikhail Drobizhev, Landon Zarowny, Jihong Zheng, Sheng-Yi Wu, Alexander W. Lohman, Alison G. Tebo, Valentina Emiliani, Kaspar Podgorski, Yi Shen, and Robert E. Campbell
2024 | Neurophotonics | https://doi.org/10.1117/1.NPh.11.2.024207

Multicolor two-photon light-patterning microscope exploiting the spatio-temporal properties of a fiber bundle

Antonio Lorca-Cámara, Christophe Tourain, Vincent de Sars, Valentina Emiliani, Nicolo Accanto
2024 | Biomedical Optics Express | https://doi.org/10.1364/BOE.507690

Ultrafast Light Targeting for High-Throughput Precise Control of Neuronal Networks

Giulia Faini*, Dimitrii Tanese*, Clément Molinier, Cécile Telliez, Massilia Hamdani, F. Blot, Christophe Tourain, Vincent de Sars, Filippo Del Bene, Benoît C. Forget, Emiliano Ronzitti #, and Valentina Emiliani
2023 | Nature Communication | https://doi.org/10.1038/s41467-023-37416-w

A flexible two-photon endoscope for fast activity imaging and cell-precise optogenetic photo-stimulation neurons in freely moving animals

Nicolò Accanto*, François G. C. Blot*, Antonio Lorca Camara*, Valeria Zampini, Florence Bui, Christophe Tourain, Noam Badt, Ori Katz, and Valentina Emiliani
2023 | Neuron | https://doi.org/10.1016/j.neuron.2022.10.030

Descanned fast light targeting (deFLiT) two-photon optogenetics

Cecile Telliez, Vincent De Sars, Valentina Emiliani, and E. Ronzitti
2023 | Biomedical Optics Express | https://doi.org/10.1364/BOE.499445

Prominent in vivo influence of single interneurons in the developing barrel cortex

Yannick Bollmann, ..., Ruth Sims, Imane Bendifallah, Erwan Leprince, Valentina Emiliani,Vincent de Sars, Emiliano Ronzitti, Agnès Baude, Hillel Adesnik, Michel Aimé Picardo, Jean-Claude Platel, David Angulo-Garcia & Rosa Cossart
2023 | Nature Neuroscience | https://doi.org/10.1038/s41593-023-01405-5

Evolutionary divergence of locomotion in two related vertebrate species

Gokul Rajan, ... , Karine Duroure, Dimitrii Tanese, Thomas Panier, ... , Benjamin Judkewitz, Christoph Gebhardt, Valentina Emiliani, Georges Debregeas, Claire Wyart, Filippo Del Bene
2022 | Cell Reports | https://doi.org/10.1016/j.celrep.2022.110585

Tools for Microscopic Measurements and Manipulation: Status Report.

Ahmed Abdelfattah, Srinivasa Rao Allu, Robert Campbell, Xiaojun Cheng, Tomáš Cižmár, Irene Costantini, Valentina Emiliani et al..
2022 | Neurophotonics | https://doi.org/10.1117/1.NPh.9.S1.013001

Optogenetics for light control of biological systems

Valentina Emiliani, Emilia Entcheva, Rainer Hedrich, Peter Hegemann, Kai R. Konrad, Christian Lüscher, Mathias Mahn, Zhuo-Hua Pan, Ruth R. Sims, Johannes Vierock & Ofer Yizhar
2022 | Nature Reviews Methods Primers | https://doi.org/10.1038/s43586-022-00136-4

All-optical inter-layers functional connectivity investigation in the mouse retina

Giulia Lia Beatrice Spampinato, Emiliano Ronzitti, Valeria Zampini, Ulisse Ferrari, Francesco Trapani, Hanen Khabou, Anurag Agraval, Deniz Dalkara, Serge Picaud, Eirini Papagiakoumou, Olivier Marre , Valentina Emiliani
2022 | Cell reports Methods | https://doi.org/10.1016/j.crmeth.2022.100268

WiChR, a highly potassium-selective channelrhodopsin for low-light one- and two-photon inhibition of excitable cells

Johannes Vierock, Enrico Shiewer, Christiane Grimm, Andrey Rozenberg, I-Wen Chen, ..., Dimitrii Tanese, Benoît C Forget, Rémi Peyronnet, Franziska Schneider-Warne, Valentina Emiliani, Oded Béjà, Peter Hegemann
2022 | Science Advances | DOI: 10.1126/sciadv.add7729

BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons

Johannes Vierock, Silvia Rodriguez-Rozada, Alexander Dieter, Ruth Sims, Imane Bendifallah, Airini Papagiakoumou, Valentina Emiliani et al.
2021 | Nature Communications | https://doi.org/10.1038/s41467-021-24759-5

Scanless two-photon excitation with temporal focusing

Eirini Papagiakoumou, Emiliano Ronzitti & Valentina Emiliani
2020 | Nature Methods | https://doi.org/10.1038/s41592-020-0795-y

Multiplexed temporally focused light shaping through a gradient index lens for precise in-depth optogenetic photostimulation

Nicolò Accanto, I-Wen Chen, Emiliano Ronzitti, Clément Molinier, Christophe Tourain, Eirini Papagiakoumou & Valentina Emiliani
2019 | Scientific Reports | https://doi.org/10.1038/s41598-019-43933-w

Compressive three-dimensional super-resolution microscopy with speckle-saturated fluorescence excitation

M. Pascucci, S. Ganesan, A. Tripathi, O. Katz, V. Emiliani & M. Guillon
2019 | Nature Communications | https://doi.org/10.1038/s41467-019-09297-5

ATP6AP2 variant impairs CNS development and neuronal survival to cause fulminant neurodegeneration

Hirose, T., Cabrera-Socorro, A., Chitayat, D., Lemonnier, T., Féraud, O., Cifuentes-Diaz, C., ... & Groszer, M
2019 | The Journal of Clinical Investigation | DOI : 10.1172/JCI79990

Parallel holographic illumination enables sub-millisecond two-photon optogenetic activation in mouse visual cortex in vivo

I-Wen Chen, Emiliano Ronzitti, Brian R. Lee, Tanya L. Daigle, Hongkui Zeng, Eirini, Papagiakoumou, and Valentina Emiliani
2018 | https://doi.org/10.1101/250795

Methods for Three-Dimensional All-Optical Manipulation of Neural Circuits

Emiliano Ronzitti, Valentina Emiliani, Eirini Papagiakoumou
2018 | Front. Cell. Neurosci | https://doi.org/10.3389/fncel.2018.00469

Optimized Chronos sets the clock for optogenetic hearing restoration

Emiliano Ronzitti, Valeria Zampini & Valentina Emiliani
2018 | Springer Nature | https://doi.org/10.15252/embj.2018101103

Multiplexed temporally focused light shaping for high-resolution multi-cell targeting

Nicolò Accanto, Clément Molinier, Dimitrii Tanese, Emiliano Ronzitti, Zachary L. Newman, Claire Wyart, Ehud Isacoff, Eirini Papagiakoumou and Valentina Emiliani
2018 | Optica | https://doi.org/10.1364/OPTICA.5.001478

Temperature Rise under Two-Photon Optogenetic Brain Stimulation

Picot, A., Dominguez, S., Liu, C., Chen, I. W., Tanese, D., Ronzitti, E., ... & Emiliani, V.
2018 | Cell Reports | https://doi.org/10.1016/j.celrep.2018.06.119

Temporally precise single-cell resolution optogenetics

O. Shemesh, D. Tanese, V. Zampini, L. Changyang, P. Kiryln, E. Ronzitti, E. Papagiakoumou, E.S. Boyden, V. Emiliani
2017 | Nature Neuroscience | https://doi.org/10.1038/s41593-017-0018-8

Job offers

No job offers

Contact

Fields marked with an asterisk (*) are mandatory.